Yeah I knew that I had to shim the whole roof, thanks for the heads up that though.
Alright well everything was going good to get the whole 5th gen assembly in including the slider until I tried to open it and noticed that one of the pieces was broken and it would not open properly. so I had to take it back out and tried to fix it but I couldn't. I ended up just swapping the glass. It wasn't that hard once I went that route. So here are a couple pics.