Backfiring through the intake. A few instances where I had that problem:
1. TPS on my H23 went bad
2. MAP sensor went bad a few months after my H22 swap, although that backfiring sounded more like a small explosion

3. Bad TPS after H22 swap, but it wasn't as bad as the other TPS
So... check the TPS first! Maybe ignition timing if you have fiddled with the distributor
I've mentioned that godforsaken TPS so many times in so many threads.... it caused too many damn problems