Stock ECU's actually run a tad on the rich side. I dont thing doing just basic bolt-ons would take it to far from the factory values in the ecu. Here is some info about the things you are considering.
Apexi SAFC is a nice addition, and is valueable down the line when you want to do more to the engine, and actually need to be able to control fuel. The SAFC is always a good idea, and with basic bolt-one you could lean out the top rev range about 4% across the board. This would gain you some extra power. As always, you will get the most from the SAFC if you can get it dyno tuned. Adding in an FPR is good for finer tuning's sake, but not 100% neccesary.
As for ignition, I would go with the MSD-6A, or the MSD-6AL. The 6AL just adds the soft touch rev limit control. It should be more than enough for your ignition needs. Although adding an ignition will not add that much power, it will ensure a complete burn of the A/F mix, and helps keep the engine running smoother. Oh and don't bother getting those grounding kits, they really aren't worth it. Also, you won't need to replace ignition wires unless yours are faulty or damaged (you didn't mention new wires, but Im just throwing that in.)
Hope I helped