everything is compensated for. I'm not sure the VAFC is also. Since it does interpret the signals comming in and out of the ECU, it might not get affected to bad.
The best alternative is the NTPOG work around. It is very easy. Just find the orange memory wire on the ecu harness, cut it, and put a small switch in to turn it on and off. Just leave it in the off position unless you throw an check engine light. That way, it feel like you reset your ecu everytime you drive your car.
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XBOX Live - Doadus51
2008 WRX Hatch with a couple mods
2010 Tundra DC 5.7L with more mods
2004 S2000 with even more mods
2002 RSX-S with the most mods